By default after you install Code On Time and create your new project, Code On Time Generator will store your project into this directory C:\Users\your_name\Documents\Code OnTime\Projects. This might introduce a problem specifically for who use ssd drive.
2. Here is the trick to change. You need to download this config [download]. Extract and copy the CodeOnTime.exe.config file into your installation folder. By default the directory will be this C:\Program Files (x86)\Code OnTime LLC\Code OnTime Generator
3. Open the CodeOnTime.exe.config with your Notepad++ and find the properties CodeOnTime.Properties.Settings. Change the Value of MyDocuments with your prefered directory.
*** you maybe will have security issue when direct save in the installation location. I suggest you to edit and save in any other directory, then copy into the installation directory
4. Try run your CodOnTime Application again, and you will see a command prompt that process to copy your library into your new location. Try create your new project and you will see the project will generate inside the new location you set.